Fallout 4 not seeing plugins I merged with merged plugins

[Jordo24]

I setup my mod organizer 2 to use merged plugins, the plugins I merge arent showing up in fallout 4, my game gets all glitchy, i also followed gamer poets guide to the letter yet nothing, any help would be appreciated

[Jordo24]

Ok Im trying something new, im having merge plugins extract the bsa"s and general assets, will see if that works

[Jordo24]

I am at my wits end fallout 4 still isn't reading the merged plugins, please help

Edited December 14, 2018 by Jordo24

[Jordo24]

Well im starting a clean save see if that works...

[Jordo24]

UPDATE: by starting a new game the merges seem to work, with minor glitches here and there