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Mod Organizer shows dirty edits and conflicts



Hi guys. Just began playing Skyrim again after a LONG time away. The ESO kinda turned me back to it. Anyhow, I read your STEP modding page on Nexus thoroughly and was fine till the last couple mods. Now I just realized I have a lot of lightbulb flags in the plugins window of Mod Organizer. So I started up TES5edit and then saw that alot of my main files had red behind them. Havent touched those yet but back to the dirty edits. 

I apply filter for cleaning, then remove identical to master records, then undelete and disable references. 

Closed TES5edit and saved the backup. Well, the lightbulb is still there. Did I not do something right or does it stay there? Someone please help me out here. 

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