Hm, except for ObjectsUtil.pex, which is overwritten by papyrus, every script is there. However, there indeed seems to be some conflict here. I made a new MO profile, disabled all mods in the left tab (except Papyrus, SkyUI, Dyndo Resources and Billiboards) and regenareted the LOD. Now it works - in the info menu, it shows esm version 2.45, although the esp version is still empty. Well, it seems I must now undergo the troublesome task to find the conflict by trial and error.