As an example, one of the warnings says
<Warning: Error loading Textures\Terrain\LODGen\Skyrim.esm\ReachFern02_000B8A6F.dds>
I tried looking for that specific file in the TexGen_Output and DynDOLOD Resources, but I can't find it. This is also the case with the other warnings. All of them are pointing to "Textures\Terrain\LODGen\..." Regarding the "missing model" errors, I found this in the DynDOLOD log:
References using base records with missing models can cause CTD.
(1) Verify that all required BSA files are loaded.
MO archive management is incompatible with many 3rd party tools like xEdit and consequently DynDOLOD.exe.
Check this startup log on top, to make sure all required BSA files are loaded via a matching esp filename.
Unfortunately, there is no way to disable MO2 archive management, as far as i know, unlike in MO where there is a checkbox to disable it.