I had the same issue with her (which I had in LE also) but haven't had any other (noticeable) issues with NPCs since then. I did do the Vanilla Start in Alt Start, so maybe that is the issue. Does anyone have an issue with the uncapper not always working? I didn't get my extra perk at levels 20 and 25. I tested it later, after finding a post for the console command "advskill onehanded 100000" and it went to 150, so it seems to be working, at times at least. I switched to xShadowman's dll loader, just for the uncapper, and tested and going up 10 levels game me 12 perks, so it seemed to work then. There are other posts on the uncapper page regarding this, one which specifically states she never has a problem with xshadowman's but skse doesn't always work.