Ok so after some mucking around and changing the gameName= and gamePath= to Skyrim Special Edition instead of just Skyrim in the ModOrganizer.ini file, MO2 now recognises the correct location and .exe-s and i have managed to connect to my nexus account, yah :) I'm now having a problem with the Dawnguard, Hearthfires and Dragonborn .esm-s not showing up in the left hand window. They show perfectly fine in the right hand window just not the left. Is it suppose to be like that for the SSE version?