I have reinstalled everything, following the steps in the list more closely (I had already installed a lot of mods before coming across the list, so I just picked a few out). This has solved my problems.
- I believe the issue with black bars on male bodies was because I didn't install the compatibility patch for Fallout Character Overhaul and Robert's Bodies. I had installed FCO a fair amount of time beforehand, so I simply overlooked it. - The issue with ragdolls causing warped skeletons still remains even after redownloading and reinstalling, so I am starting to believe it may be an issue with that mod. I've uninstalled it again.
