Tools won't see mods (Oldrim Skyrim)

[PapaSeba]

Hi there. I recently reinstalled my old skyrim (oldrim) and switched from NMM to Mod Organizer 2 while at it. I've installed a small part of my previous mods and some new mods on here, which all work other than the ones that need tools. Problem is tools like FNIS, LOOT and TES5edit won't see the any mod. I've had some problems with MO in antivirus but I've fixed that by unblocking and putting both SKSE, TESV and MO on the exceptions. I've also put a log here. https://drive.google.com/file/d/15wPkpan3-gAY4UHiuI4EKYYpfx7Mzs0A/view?usp=sharing
 
I can provide any more info needed.
 
Thanks!

Edited March 31, 2019 by PapaSeba

[easyrider1988]

Do you run the tools from Mod Organizer? The executables have to be added to it. See https://wiki.step-project.com/Guide:Mod_Organizer#Third_Party_Programs